Package: fdadensity 0.1.4

Alexander Petersen

fdadensity: Functional Data Analysis for Density Functions by Transformation to a Hilbert Space

An implementation of the methodology described in Petersen and Mueller (2016) <doi:10.1214/15-AOS1363> for the functional data analysis of samples of density functions. Densities are first transformed to their corresponding log quantile densities, followed by ordinary Functional Principal Components Analysis (FPCA). Transformation modes of variation yield improved interpretation of the variability in the data as compared to FPCA on the densities themselves. The standard fraction of variance explained (FVE) criterion commonly used for functional data is adapted to the transformation setting, also allowing for an alternative quantification of variability for density data through the Wasserstein metric of optimal transport.

Authors:A. Petersen [aut], P. Z. Hadjipantelis [aut], H.G. Mueller [aut], Alexander Petersen [cre]

fdadensity_0.1.4.tar.gz
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fdadensity_0.1.4.tgz(r-4.6-x86_64)fdadensity_0.1.4.tgz(r-4.6-arm64)fdadensity_0.1.4.tgz(r-4.5-x86_64)fdadensity_0.1.4.tgz(r-4.5-arm64)
fdadensity_0.1.4.tar.gz(r-4.7-arm64)fdadensity_0.1.4.tar.gz(r-4.7-x86_64)fdadensity_0.1.4.tar.gz(r-4.6-arm64)fdadensity_0.1.4.tar.gz(r-4.6-x86_64)
fdadensity_0.1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
fdadensity/json (API)

# Install 'fdadensity' in R:
install.packages('fdadensity', repos = c('https://functionaldata.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/functionaldata/tdens/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • BacteriaPI - PH distribution of 813 bacterial organisms
  • Top50BabyNames - Baby name popularity densities for 50 male and 50 female names in the USA

On CRAN:

Conda:

cpp

4.14 score 3 stars 1 packages 31 scripts 383 downloads 1 mentions 15 exports 63 dependencies

Last updated from:0492054c50. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK112
linux-devel-x86_64OK134
source / vignettesOK266
linux-release-arm64OK100
linux-release-x86_64OK142
macos-release-arm64OK130
macos-release-x86_64OK289
macos-oldrel-arm64OK102
macos-oldrel-x86_64OK361
windows-devel-arm64OK220
windows-devel-x86_64OK153
windows-release-arm64OK185
windows-release-x86_64OK106
windows-oldrel-x86_64OK106
wasm-releaseOK111

Exports:CreateModeOfVarPlotLQ2Ddens2lqddens2qddens2quantileDeregulariseByAlphaFPCAdensGetFVEgetWFmeanlqd2denslqd2quantileMakeDENsampleMakeLQDsamplenormaliseDensitiesqd2densRegulariseByAlpha

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestevaluatefarverfastmapfdapacefontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemimennetnumDerivpracmaR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml