Package: fdadensity 0.1.4

Alexander Petersen

fdadensity: Functional Data Analysis for Density Functions by Transformation to a Hilbert Space

An implementation of the methodology described in Petersen and Mueller (2016) <doi:10.1214/15-AOS1363> for the functional data analysis of samples of density functions. Densities are first transformed to their corresponding log quantile densities, followed by ordinary Functional Principal Components Analysis (FPCA). Transformation modes of variation yield improved interpretation of the variability in the data as compared to FPCA on the densities themselves. The standard fraction of variance explained (FVE) criterion commonly used for functional data is adapted to the transformation setting, also allowing for an alternative quantification of variability for density data through the Wasserstein metric of optimal transport.

Authors:A. Petersen [aut], P. Z. Hadjipantelis [aut], H.G. Mueller [aut], Alexander Petersen [cre]

fdadensity_0.1.4.tar.gz
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fdadensity_0.1.4.tgz(r-4.6-x86_64)fdadensity_0.1.4.tgz(r-4.6-arm64)fdadensity_0.1.4.tgz(r-4.5-x86_64)fdadensity_0.1.4.tgz(r-4.5-arm64)
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fdadensity_0.1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
fdadensity/json (API)

# Install 'fdadensity' in R:
install.packages('fdadensity', repos = c('https://functionaldata.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/functionaldata/tdens/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • BacteriaPI - PH distribution of 813 bacterial organisms
  • Top50BabyNames - Baby name popularity densities for 50 male and 50 female names in the USA

On CRAN:

Conda:

cpp

4.12 score 3 stars 1 packages 29 scripts 339 downloads 1 mentions 15 exports 63 dependencies

Last updated from:0492054c50. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK239
linux-devel-x86_64OK236
source / vignettesOK331
linux-release-arm64OK235
linux-release-x86_64OK245
macos-release-arm64OK108
macos-release-x86_64OK327
macos-oldrel-arm64OK82
macos-oldrel-x86_64OK174
windows-develOK97
windows-releaseOK144
windows-oldrelOK99
wasm-releaseOK285

Exports:CreateModeOfVarPlotLQ2Ddens2lqddens2qddens2quantileDeregulariseByAlphaFPCAdensGetFVEgetWFmeanlqd2denslqd2quantileMakeDENsampleMakeLQDsamplenormaliseDensitiesqd2densRegulariseByAlpha

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestevaluatefarverfastmapfdapacefontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemimennetnumDerivpracmaR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml